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Index of all Fields and Methods

A

a. Variable in class regression.Regress
anchor. Variable in class rubberband.Rubberband
anchor(Point). Method in class rubberband.Rubberband
atof(String). Static method in class corejava.Format
Converts a string of digits to an double
atoi(String). Static method in class corejava.Format
Converts a string of digits (decimal, octal or hex) to an integer
atol(String). Static method in class corejava.Format
Converts a string of digits (decimal, octal or hex) to a long integer

B

b. Variable in class regression.Regress
bakslv_f77(int, double[][], double[], double[]). Static method in class optimization.Uncmin_f77

The bakslv_f77 method solves Ax = b where A is an upper triangular matrix.

Blas_f77(). Constructor for class linear_algebra.Blas_f77
Blas_j(). Constructor for class linear_algebra.Blas_j
bounds(). Method in class rubberband.Rubberband
box(Graphics, double, double, double, double). Method in class SPV_graphics.SPVGrint
DrawRect that uses world coordinates rather than pixel coordinates.

C

CDF_Normal(). Constructor for class distributions.CDF_Normal
chlhsn_f77(int, double[][], double, double[], double[]). Static method in class optimization.Uncmin_f77

The chlhsn_f77 method finds "THE L(L-TRANSPOSE) [WRITTEN LL+] DECOMPOSITION OF THE PERTURBED MODEL HESSIAN MATRIX A+MU*I(WHERE MU\0 AND I IS THE IDENTITY MATRIX) WHICH IS SAFELY POSITIVE DEFINITE.

choldc_f77(int, double[][], double, double, double[]). Static method in class optimization.Uncmin_f77

The choldc_f77 method finds "THE PERTURBED L(L-TRANSPOSE) [WRITTEN LL+] DECOMPOSITION OF A+D, WHERE D IS A NON-NEGATIVE DIAGONAL MATRIX ADDED TO A IF NECESSARY TO ALLOW THE CHOLESKY DECOMPOSITION TO CONTINUE." Translated by Steve Verrill, April 15, 1998.

Cholesky(). Constructor for class linear_algebra.Cholesky
Cholesky_f77(). Constructor for class linear_algebra.Cholesky_f77
Cholesky_j(). Constructor for class linear_algebra.Cholesky_j
CholTest(). Constructor for class linear_algebra.CholTest
CholTest_f77(). Constructor for class linear_algebra.CholTest_f77
CholTest_j(). Constructor for class linear_algebra.CholTest_j
colaxpy_f77(int, double, double[][], int, int, int). Static method in class linear_algebra.Blas_f77

This method multiplies a constant times a portion of a column of a matrix and adds the product to the corresponding portion of another column of the matrix --- a portion of col2 is replaced by the corresponding portion of a*col1 + col2.

colaxpy_j(int, double, double[][], int, int, int). Static method in class linear_algebra.Blas_j

This method multiplies a constant times a portion of a column of a matrix and adds the product to the corresponding portion of another column of the matrix --- a portion of col2 is replaced by the corresponding portion of a*col1 + col2.

coldot_f77(int, double[][], int, int, int). Static method in class linear_algebra.Blas_f77

This method calculates the dot product of portions of two columns of a matrix.

coldot_j(int, double[][], int, int, int). Static method in class linear_algebra.Blas_j

This method calculates the dot product of portions of two columns of a matrix.

colisamax_f77(int, double[][], int, int, int). Static method in class linear_algebra.Blas_f77

This method finds the index of the element of a portion of a column of a matrix that has the maximum absolute value.

colisamax_j(int, double[][], int, int, int). Static method in class linear_algebra.Blas_j

This method finds the index of the element of a portion of a column of a matrix that has the maximum absolute value.

colnrm2_f77(int, double[][], int, int). Static method in class linear_algebra.Blas_f77

This method calculates the Euclidean norm of a portion of a column of a matrix.

colnrm2_j(int, double[][], int, int). Static method in class linear_algebra.Blas_j

This method calculates the Euclidean norm of a portion of a column of a matrix.

colrot_f77(int, double[][], int, int, double, double). Static method in class linear_algebra.Blas_f77

This method "applies a plane rotation." It is a modification of the LINPACK function DROT.

colrot_j(int, double[][], int, int, double, double). Static method in class linear_algebra.Blas_j

This method "applies a plane rotation." It is a modification of the LINPACK function DROT.

colscal_f77(int, double, double[][], int, int). Static method in class linear_algebra.Blas_f77

This method scales a portion of a column of a matrix by a constant.

colscal_j(int, double, double[][], int, int). Static method in class linear_algebra.Blas_j

This method scales a portion of a column of a matrix by a constant.

colswap_f77(int, double[][], int, int). Static method in class linear_algebra.Blas_f77

This method interchanges two columns of a matrix.

colswap_j(int, double[][], int, int). Static method in class linear_algebra.Blas_j

This method interchanges two columns of a matrix.

colvaxpy_f77(int, double, double[][], double[], int, int). Static method in class linear_algebra.Blas_f77

This method multiplies a constant times a portion of a column of a matrix x[ ][ ] and adds the product to the corresponding portion of a vector y[ ] --- a portion of y[ ] is replaced by the corresponding portion of ax[ ][j] + y[ ].

colvaxpy_j(int, double, double[][], double[], int, int). Static method in class linear_algebra.Blas_j

This method multiplies a constant times a portion of a column of a matrix x[ ][ ] and adds the product to the corresponding portion of a vector y[ ] --- a portion of y[ ] is replaced by the corresponding portion of ax[ ][j] + y[ ].

colvdot_f77(int, double[][], double[], int, int). Static method in class linear_algebra.Blas_f77

This method calculates the dot product of a portion of a column of a matrix and the corresponding portion of a vector.

colvdot_j(int, double[][], double[], int, int). Static method in class linear_algebra.Blas_j

This method calculates the dot product of a portion of a column of a matrix and the corresponding portion of a vector.

colvraxpy_f77(int, double, double[], double[][], int, int). Static method in class linear_algebra.Blas_f77

This method multiplies a constant times a portion of a vector y[ ] and adds the product to the corresponding portion of a column of a matrix x[ ][ ] --- a portion of column j of x[ ][ ] is replaced by the corresponding portion of ay[ ] + x[ ][j].

colvraxpy_j(int, double, double[], double[][], int, int). Static method in class linear_algebra.Blas_j

This method multiplies a constant times a portion of a vector y[ ] and adds the product to the corresponding portion of a column of a matrix x[ ][ ] --- a portion of column j of x[ ][ ] is replaced by the corresponding portion of ay[ ] + x[ ][j].

Console(). Constructor for class corejava.Console

D

daxpy_f77(int, double, double[], int, double[], int). Static method in class linear_algebra.Blas_f77

This method multiplies a constant times a vector and adds the product to another vector --- dy[ ] = da*dx[ ] + dy[ ].

daxpy_j(int, double, double[], int, double[], int). Static method in class linear_algebra.Blas_j

This method multiplies a constant times a vector and adds the product to another vector --- dy[ ] = da*dx[ ] + dy[ ].

dcopy_f77(int, double[], int, double[], int). Static method in class linear_algebra.Blas_f77

This method copies the vector dx[ ] to the vector dy[ ].

dcopy_j(int, double[], int, double[], int). Static method in class linear_algebra.Blas_j

This method copies the vector dx[ ] to the vector dy[ ].

dcopyp_f77(int, double[], double[], int). Static method in class linear_algebra.Blas_f77

This method copies a portion of vector x[ ] to the corresponding portion of vector y[ ].

dcopyp_j(int, double[], double[], int). Static method in class linear_algebra.Blas_j

This method copies a portion of vector x[ ] to the corresponding portion of vector y[ ].

ddot_f77(int, double[], int, double[], int). Static method in class linear_algebra.Blas_f77

This method calculates the dot product of two vectors.

ddot_j(int, double[], int, double[], int). Static method in class linear_algebra.Blas_j

This method calculates the dot product of two vectors.

dfault_f77(int, double[], double[], double[], int[], int[], int[], int[], int[], int[], int[], double[], double[], double[], double[]). Static method in class optimization.Uncmin_f77

The dfault_f77 method sets default values for each input variable to the minimization algorithm.

dgedi_f77(double[][], int, int[], double[], double[], int). Static method in class linear_algebra.LU_f77

This method uses the LU decomposition provided by DGEFA to obtain the determinant and/or inverse of a full rank n by n matrix.

dgedi_j(double[][], int, int[], double[], double[], int). Static method in class linear_algebra.LU_j

This method uses the LU decomposition provided by DGEFA to obtain the determinant and/or inverse of a full rank n by n matrix.

dgefa_f77(double[][], int, int[]). Static method in class linear_algebra.LU_f77

This method decomposes an n by n matrix A into a product, LU, where L is a lower triangular matrix and U is an upper triangular matrix.

dgefa_j(double[][], int, int[]). Static method in class linear_algebra.LU_j

This method decomposes an n by n matrix A into a product, LU, where L is a lower triangular matrix and U is an upper triangular matrix.

dgesl_f77(double[][], int, int[], double[], int). Static method in class linear_algebra.LU_f77

This method uses the LU decomposition provided by DGEFA to solve the equation Ax = b where A is a full rank n by n matrix.

dgesl_j(double[][], int, int[], double[], int). Static method in class linear_algebra.LU_j

This method uses the LU decomposition provided by DGEFA to solve the equation Ax = b where A is a full rank n by n matrix.

dnrm2_f77(int, double[], int). Static method in class linear_algebra.Blas_f77

This method calculates the Euclidean norm of the vector stored in dx[ ] with storage increment incx.

dnrm2_j(int, double[], int). Static method in class linear_algebra.Blas_j

This method calculates the Euclidean norm of the vector stored in dx[ ] with storage increment incx.

dnrm2p_f77(int, double[], int). Static method in class linear_algebra.Blas_f77

This method calculates the Euclidean norm of a portion of a vector x[ ].

dnrm2p_j(int, double[], int). Static method in class linear_algebra.Blas_j

This method calculates the Euclidean norm of a portion of a vector x[ ].

dogdrv_f77(int, double[], double[], double[], double[][], double[], double[], double[], Uncmin_methods, double[], double[], double[], double[], int[], boolean[], double[], double[], double[], double[]). Static method in class optimization.Uncmin_f77

The dogdrv_f77 method finds the next Newton iterate (xpls) by the double dogleg method.

dogstp_f77(int, double[], double[][], double[], double[], double, double[], boolean[], boolean[], double[], double[], double[], double[], double[], double[]). Static method in class optimization.Uncmin_f77

The dogstp_f77 method finds the new step by the double dogleg appproach.

dpodi_f77(double[][], int, double[], int). Static method in class linear_algebra.Cholesky_f77

This method uses the Cholesky decomposition provided by DPOFA to obtain the determinant and/or inverse of a symmetric, positive definite matrix.

dpodi_j(double[][], int, double[], int). Static method in class linear_algebra.Cholesky_j

This method uses the Cholesky decomposition provided by DPOFA to obtain the determinant and/or inverse of a symmetric, positive definite matrix.

dpofa_f77(double[][], int). Static method in class linear_algebra.Cholesky_f77

This method decomposes an p by p symmetric, positive definite matrix X into a product, R´R, where R is an upper triangular matrix and R´ is the transpose of R.

dpofa_j(double[][], int). Static method in class linear_algebra.Cholesky_j

This method decomposes an p by p symmetric, positive definite matrix X into a product, R´R, where R is an upper triangular matrix and R´ is the transpose of R.

dposl_f77(double[][], int, double[]). Static method in class linear_algebra.Cholesky_f77

This method uses the Cholesky decomposition provided by DPOFA to solve the equation Ax = b where A is symmetric, positive definite.

dposl_j(double[][], int, double[]). Static method in class linear_algebra.Cholesky_j

This method uses the Cholesky decomposition provided by DPOFA to solve the equation Ax = b where A is symmetric, positive definite.

dqrdc_f77(double[][], int, int, double[], int[], double[], int). Static method in class linear_algebra.QR_f77

This method decomposes an n by p matrix X into a product, QR, of an orthogonal n by n matrix Q and an upper triangular n by p matrix R.

dqrdc_j(double[][], int, int, double[], int[], double[], int). Static method in class linear_algebra.QR_j

This method decomposes an n by p matrix X into a product, QR, of an orthogonal n by n matrix Q and an upper triangular n by p matrix R.

dqrsl_f77(double[][], int, int, double[], double[], double[], double[], double[], double[], double[], int). Static method in class linear_algebra.QR_f77

This method "applies the output of DQRDC to compute coordinate transformations, projections, and least squares solutions." For details, see the comments in the code.

dqrsl_j(double[][], int, int, double[], double[], double[], double[], double[], double[], double[], int). Static method in class linear_algebra.QR_j

This method "applies the output of DQRDC to compute coordinate transformations, projections, and least squares solutions." For details, see the comments in the code.

drawLast(Graphics). Method in class rubberband.Rubberband
drawLast(Graphics). Method in class rubberband.RubberbandRectangle
drawLast(Graphics). Method in class rubberband.RubberbandRectangleX
drawNext(Graphics). Method in class rubberband.Rubberband
drawNext(Graphics). Method in class rubberband.RubberbandRectangle
drawNext(Graphics). Method in class rubberband.RubberbandRectangleX
drotg_f77(double[]). Static method in class linear_algebra.Blas_f77

This method constructs a Givens plane rotation.

drotg_j(double[]). Static method in class linear_algebra.Blas_j

This method constructs a Givens plane rotation.

dscal_f77(int, double, double[], int). Static method in class linear_algebra.Blas_f77

This method scales a vector by a constant.

dscal_j(int, double, double[], int). Static method in class linear_algebra.Blas_j

This method scales a vector by a constant.

dscalp_f77(int, double, double[], int). Static method in class linear_algebra.Blas_f77

This method scales a portion of a vector by a constant.

dscalp_j(int, double, double[], int). Static method in class linear_algebra.Blas_j

This method scales a portion of a vector by a constant.

dsvdc_f77(double[][], int, int, double[], double[], double[][], double[][], double[], int). Static method in class linear_algebra.SVDC_f77

This method decomposes a n by p matrix X into a product UDV´ where ...

dsvdc_j(double[][], int, int, double[], double[], double[][], double[][], double[], int). Static method in class linear_algebra.SVDC_j

This method decomposes a n by p matrix X into a product UDV´ where ...

dswap_f77(int, double[], int, double[], int). Static method in class linear_algebra.Blas_f77

This method interchanges two vectors.

dswap_j(int, double[], int, double[], int). Static method in class linear_algebra.Blas_j

This method interchanges two vectors.


E

end. Variable in class rubberband.Rubberband
end(Point). Method in class rubberband.Rubberband
enorm_f77(int, double[]). Static method in class optimization.Minpack_f77

The enorm_f77 method calculates the Euclidean norm of a vector.


F

f_to_minimize(double). Method in class optimization.FminTest
f_to_minimize(double[]). Method in class optimization.UncminTest_f77
factorPosDef(double[][], int). Method in class linear_algebra.Cholesky

This method factors the n by n symmetric positive definite matrix A as RR´ where R is a lower triangular matrix.

fcn(int, int, double[], double[], double[][], int[]). Method in class optimization.LmderTest_f77
fcn(int, int, double[], double[], int[]). Method in class optimization.LmdifTest_f77
fdjac2_f77(Lmdif_fcn, int, int, double[], double[], double[][], int[], double, double[]). Static method in class optimization.Minpack_f77

The fdjac2 method computes a forward-difference approximation to the m by n Jacobian matrix associated with a specified problem of m functions in n variables.

fit(double[], double[], int, Regress). Method in class regression.Regress

This method performs a simple linear regression (y = a + b*x).

fm. Variable in class SPV_graphics.SPVGraph
Fmin(). Constructor for class optimization.Fmin
fmin(double, double, Fmin_methods, double). Static method in class optimization.Fmin

This method performs a 1-dimensional minimization.

form(char). Method in class corejava.Format
Formats a character into a string (like sprintf in C)
form(double). Method in class corejava.Format
Formats a double into a string (like sprintf in C)
form(long). Method in class corejava.Format
Formats a long integer into a string (like sprintf in C)
form(String). Method in class corejava.Format
Formats a string into a larger string (like sprintf in C)
Format(String). Constructor for class corejava.Format
Formats the number following printf conventions.
forslv_f77(int, double[][], double[], double[]). Static method in class optimization.Uncmin_f77

The forslv_f77 method solves Ax = b where A is a lower triangular matrix.

fstocd_f77(int, double[], Uncmin_methods, double[], double, double[]). Static method in class optimization.Uncmin_f77

The fstocd_f77 method finds a central difference approximation to the gradient of the function to be minimized.

fstofd_f77(int, double[], Uncmin_methods, double[], double[], double[], double). Static method in class optimization.Uncmin_f77

This version of the fstofd_f77 method finds first order finite difference approximations for gradients.

fstofd_f77(int, double[], Uncmin_methods, double[], double[][], double[], double, double[]). Static method in class optimization.Uncmin_f77

This version of the fstofd_f77 method finds a finite difference approximation to the Hessian.


G

g. Variable in class SPV_graphics.SPVGraph
generate(double[], int, int, int, Histo). Method in class tests_of_fit.Histo

generate(double[], int, NPP). Method in class tests_of_fit.NPP

This method takes a set of sorted data and returns the associated normal scores (Weisberg-Bingham versions) and the value of the Weisberg-Bingham version of the Shapiro-Wilk statistic for this data.

getAnchor(). Method in class rubberband.Rubberband
getEnd(). Method in class rubberband.Rubberband
getLast(). Method in class rubberband.Rubberband
getStretched(). Method in class rubberband.Rubberband
gradient(double[], double[]). Method in class optimization.UncminTest_f77
grdchk_f77(int, double[], Uncmin_methods, double[], double[], double[], double[], double[], double, double, double[]). Static method in class optimization.Uncmin_f77

The grdchk_f77 method checks the analytic gradient supplied by the user.


H

heschk_f77(int, double[], Uncmin_methods, double[], double[], double[][], double[], double[], double, double, int[], double[], double[], double[]). Static method in class optimization.Uncmin_f77

The heschk_f77 method checks the analytic Hessian supplied by the user.

hessian(double[], double[][]). Method in class optimization.UncminTest_f77
Histo(). Constructor for class tests_of_fit.Histo
hookdr_f77(int, double[], double[], double[], double[][], double[], double[], double[], double[], Uncmin_methods, double[], double[], double[], double[], int[], boolean[], double[], double[], double[], double[], double[], double[], double[], double, int[]). Static method in class optimization.Uncmin_f77

The hookdr_f77 method finds a next Newton iterate (xpls) by the More-Hebdon technique.

hookst_f77(int, double[], double[][], double[], double[], double[], double, double[], double[], double[], double[], double[], boolean[], double[], boolean[], double[], double). Static method in class optimization.Uncmin_f77

The hookst_f77 method finds a new step by the More-Hebdon algorithm.

hsnint_f77(int, double[][], double[], int[]). Static method in class optimization.Uncmin_f77

The hsnint_f77 method provides the initial Hessian when secant updates are being used.


I

ifail. Variable in class tests_of_fit.Histo
imnmx. Variable in class SPV_graphics.SPVGraph
info. Variable in class linear_algebra.NotFullRankException
info. Variable in class linear_algebra.NotPosDefException
info. Variable in class linear_algebra.SVDCException
initpt_f77(int, double[], int, double). Static method in class optimization.LmderTest_f77
initpt_f77(int, double[], int, double). Static method in class optimization.LmdifTest_f77
invertLower(double[][], int). Method in class linear_algebra.Triangular
This method obtains the inverse of a lower triangular n by n matrix L.
invertPosDef(double[][], int, boolean). Method in class linear_algebra.Cholesky

This method obtains the inverse of an n by n symmetric positive definite matrix A.

On entrance:
If factored == false, the lower triangle of a[ ][ ] should contain the lower triangle of A.
If factored == true, the lower triangle of a[ ][ ] should contain a lower triangular matrix R such that RR´ = A.
invertUpper(double[][], int). Method in class linear_algebra.Triangular
This method obtains the inverse of an upper triangular n by n matrix U.
isamax_f77(int, double[], int). Static method in class linear_algebra.Blas_f77

This method finds the index of the element of a vector that has the maximum absolute value.

isamax_j(int, double[], int). Static method in class linear_algebra.Blas_j

This method finds the index of the element of a vector that has the maximum absolute value.

isort(int[], int[], int[], int). Static method in class linear_algebra.QRTest_j

L

labx. Variable in class SPV_graphics.SPVGraph
laby. Variable in class SPV_graphics.SPVGraph
last. Variable in class rubberband.Rubberband
lastBounds(). Method in class rubberband.Rubberband
line. Variable in class SPV_graphics.SPVGraph
lltslv_f77(int, double[][], double[], double[]). Static method in class optimization.Uncmin_f77

The lltslv_f77 method solves Ax = b where A has the form L(L transpose) but only the lower triangular part, L, is stored.

lmder1_f77(Lmder_fcn, int, int, double[], double[], double[][], double, int[], int[]). Static method in class optimization.Minpack_f77

The lmder1_f77 method minimizes the sum of the squares of m nonlinear functions in n variables by a modification of the Levenberg-Marquardt algorithm.

lmder_f77(Lmder_fcn, int, int, double[], double[], double[][], double, double, double, int, double[], int, double, int, int[], int[], int[], int[], double[]). Static method in class optimization.Minpack_f77

The lmder_f77 method minimizes the sum of the squares of m nonlinear functions in n variables by a modification of the Levenberg-Marquardt algorithm.

LmderTest_f77(). Constructor for class optimization.LmderTest_f77
lmdif1_f77(Lmdif_fcn, int, int, double[], double[], double, int[]). Static method in class optimization.Minpack_f77

The lmdif1_f77 method minimizes the sum of the squares of m nonlinear functions in n variables by a modification of the Levenberg-Marquardt algorithm.

lmdif_f77(Lmdif_fcn, int, int, double[], double[], double, double, double, int, double, double[], int, double, int, int[], int[], double[][], int[], double[]). Static method in class optimization.Minpack_f77

The lmdif_f77 method minimizes the sum of the squares of m nonlinear functions in n variables by a modification of the Levenberg-Marquardt algorithm.

LmdifTest_f77(). Constructor for class optimization.LmdifTest_f77
lmpar_f77(int, double[][], int[], double[], double[], double, double[], double[], double[], double[], double[]). Static method in class optimization.Minpack_f77

Given an m by n matrix A, an n by n nonsingular diagonal matrix D, an m-vector b, and a positive number delta, the problem is to determine a value for the parameter par such that if x solves the system

           A*x = b ,     sqrt(par)*D*x = 0
in the least squares sense, and dxnorm is the Euclidean norm of D*x, then either par is zero and
           (dxnorm-delta) <= 0.1*delta ,
or par is positive and
           abs(dxnorm-delta) <= 0.1*delta .
  
lnsrch_f77(int, double[], double[], double[], double[], double[], double[], Uncmin_methods, boolean[], int[], double[], double[], double[]). Static method in class optimization.Uncmin_f77

The lnsrch_f77 method finds a next Newton iterate by line search.

LU_f77(). Constructor for class linear_algebra.LU_f77
LU_j(). Constructor for class linear_algebra.LU_j
LUTest_f77(). Constructor for class linear_algebra.LUTest_f77
LUTest_j(). Constructor for class linear_algebra.LUTest_j

M

main(String[]). Static method in class linear_algebra.CholTest
main(String[]). Static method in class linear_algebra.CholTest_f77
main(String[]). Static method in class linear_algebra.CholTest_j
main(String[]). Static method in class optimization.FminTest
main(String[]). Static method in class corejava.Format
a test stub for the format class
main(String[]). Static method in class optimization.LmderTest_f77
main(String[]). Static method in class optimization.LmdifTest_f77
main(String[]). Static method in class linear_algebra.LUTest_f77
main(String[]). Static method in class linear_algebra.LUTest_j
main(String[]). Static method in class linear_algebra.QRTest_f77
main(String[]). Static method in class linear_algebra.QRTest_j
main(String[]). Static method in class linear_algebra.SVDCTest_f77
main(String[]). Static method in class linear_algebra.SVDCTest_j
main(String[]). Static method in class optimization.UncminTest_f77
marker. Variable in class SPV_graphics.SPVGraph
markersize. Variable in class SPV_graphics.SPVGraph
markertype. Variable in class SPV_graphics.SPVGraph
matmat_f77(double[][], double[][], double[][], int, int, int). Static method in class linear_algebra.Blas_f77

This method multiplies an n x p matrix by a p x r matrix.

matmat_j(double[][], double[][], double[][], int, int, int). Static method in class linear_algebra.Blas_j

This method multiplies an n x p matrix by a p x r matrix.

mattran_f77(double[][], double[][], int, int). Static method in class linear_algebra.Blas_f77

This method obtains the transpose of an n x p matrix.

mattran_j(double[][], double[][], int, int). Static method in class linear_algebra.Blas_j

This method obtains the transpose of an n x p matrix.

matvec_f77(double[][], double[], double[], int, int). Static method in class linear_algebra.Blas_f77

This method multiplies an n x p matrix by a p x 1 vector.

matvec_j(double[][], double[], double[], int, int). Static method in class linear_algebra.Blas_j

This method multiplies an n x p matrix by a p x 1 vector.

Minpack_f77(). Constructor for class optimization.Minpack_f77
mvmltl_f77(int, double[][], double[], double[]). Static method in class optimization.Uncmin_f77

The mvmltl_f77 method computes y = Lx where L is a lower triangular matrix stored in A.

mvmlts_f77(int, double[][], double[], double[]). Static method in class optimization.Uncmin_f77

The mvmlts_f77 method computes y = Ax where A is a symmetric matrix stored in its lower triangular part.

mvmltu_f77(int, double[][], double[], double[]). Static method in class optimization.Uncmin_f77

The mvmltu_f77 method computes Y = (L transpose)X where L is a lower triangular matrix stored in A (L transpose is taken implicitly).


N

n. Variable in class regression.Regress
n. Variable in class SPV_graphics.SPVGraph
normi(double). Static method in class linear_algebra.QRTest_f77

This is a normal cdf inverse routine.

normi(double). Static method in class linear_algebra.QRTest_j

This is a normal cdf inverse routine.

normi(double). Static method in class linear_algebra.SVDCTest_f77

This is a normal cdf inverse routine.

normi(double). Static method in class linear_algebra.SVDCTest_j

This is a normal cdf inverse routine.

NotFullRankException(). Constructor for class linear_algebra.NotFullRankException
NotFullRankException(int). Constructor for class linear_algebra.NotFullRankException
NotFullRankException(String). Constructor for class linear_algebra.NotFullRankException
NotPosDefException(). Constructor for class linear_algebra.NotPosDefException
NotPosDefException(int). Constructor for class linear_algebra.NotPosDefException
NotPosDefException(String). Constructor for class linear_algebra.NotPosDefException
NPP(). Constructor for class tests_of_fit.NPP
npts. Variable in class tests_of_fit.Histo

O

optchk_f77(int, double[], double[], double[], double[], double[], int[], int[], double, double[], int[], int[], int[], int[], double[], int[]). Static method in class optimization.Uncmin_f77

The optchk_f77 method checks the input for reasonableness.

optdrv_f77(int, double[], Uncmin_methods, double[], double[], int[], int[], int[], int[], int[], int[], int[], double[], double[], double[], double[], double[], double[], double[], int[], double[][], double[], double[], double[], double[], double[], double[], double[], double[]). Static method in class optimization.Uncmin_f77

The optdrv_f77 method is the driver for the nonlinear optimization problem.

optif0_f77(int, double[], Uncmin_methods, double[], double[], double[], int[], double[][], double[]). Static method in class optimization.Uncmin_f77

The optif0_f77 method minimizes a smooth nonlinear function of n variables.

optif9_f77(int, double[], Uncmin_methods, double[], double[], int[], int[], int[], int[], int[], int[], int[], double[], double[], double[], double[], double[], double[], double[], int[], double[][], double[]). Static method in class optimization.Uncmin_f77

The optif9_f77 method minimizes a smooth nonlinear function of n variables.

optstp_f77(int, double[], double[], double[], double[], int[], int[], int[], double[], double[], double[], double[], int[], int[], boolean[], int[]). Static method in class optimization.Uncmin_f77

The optstp_f77 method determines whether the algorithm should terminate due to any of the following: 1) problem solved within user tolerance 2) convergence within user tolerance 3) iteration limit reached 4) divergence or too restrictive maximum step (stepmx) suspected Translated by Steve Verrill, May 12, 1998.


P

ph2wh(int). Method in class SPV_graphics.SPVGrint
pixel height to world coordinate height
pred. Variable in class regression.Regress
print(PrintStream, String, char). Static method in class corejava.Format
prints a formatted number following printf conventions
print(PrintStream, String, double). Static method in class corejava.Format
prints a formatted number following printf conventions
print(PrintStream, String, long). Static method in class corejava.Format
prints a formatted number following printf conventions
print(PrintStream, String, String). Static method in class corejava.Format
prints a formatted number following printf conventions
printPrompt(String). Static method in class corejava.Console
print a prompt on the console but don't print a newline
pw2ww(int). Method in class SPV_graphics.SPVGrint
pixel width to world coordinate width

Q

QR_f77(). Constructor for class linear_algebra.QR_f77
QR_j(). Constructor for class linear_algebra.QR_j
qraux1_f77(int, double[][], int). Static method in class optimization.Uncmin_f77

The qraux1_f77 method interchanges rows i,i+1 of the upper Hessenberg matrix r, columns i to n.

qraux2_f77(int, double[][], int, double, double). Static method in class optimization.Uncmin_f77

The qraux2_f77 method pre-multiplies r by the Jacobi rotation j(i,i+1,a,b).

qrfac_f77(int, int, double[][], boolean, int[], double[], double[], double[]). Static method in class optimization.Minpack_f77

The qrfac_f77 method uses Householder transformations with column pivoting (optional) to compute a QR factorization of the m by n matrix A.

qrsolv_f77(int, double[][], int[], double[], double[], double[], double[], double[]). Static method in class optimization.Minpack_f77

Given an m by n matrix A, an n by n diagonal matrix D, and an m-vector b, the problem is to determine an x which solves the system

    Ax = b ,     Dx = 0 ,
in the least squares sense.
QRTest_f77(). Constructor for class linear_algebra.QRTest_f77
QRTest_j(). Constructor for class linear_algebra.QRTest_j
qrupdt_f77(int, double[][], double[], double[]). Static method in class optimization.Uncmin_f77

The qrupdt_f77 method finds an orthogonal n by n matrix, Q*, and an upper triangular n by n matrix, R*, such that (Q*)(R*) = R+U(V+).


R

readDouble(String). Static method in class corejava.Console
read a floating point number from the console.
readInt(String). Static method in class corejava.Console
read an integer from the console.
readString(). Static method in class corejava.Console
read a string from the console.
readString(String). Static method in class corejava.Console
read a string from the console.
readWord(). Static method in class corejava.Console
read a word from the console.
Real_Sorts(). Constructor for class sorts.Real_Sorts
Regress(). Constructor for class regression.Regress
resid. Variable in class regression.Regress
result_f77(int, double[], double[], double[], double[][], double[], int[], int). Static method in class optimization.Uncmin_f77

The result_f77 method prints information.

rsort(double[], double[], int[], int). Static method in class sorts.Real_Sorts

This method attempts to perform an n*log(n) sort rather than an n*n sort.

Rubberband(Component). Constructor for class rubberband.Rubberband
RubberbandRectangle(Component). Constructor for class rubberband.RubberbandRectangle
RubberbandRectangleX(Component). Constructor for class rubberband.RubberbandRectangleX

S

sclmul_f77(int, double, double[], double[]). Static method in class optimization.Uncmin_f77

The sclmul_f77 method multiplies a vector by a scalar.

scores. Variable in class tests_of_fit.NPP
secfac_f77(int, double[], double[], double[][], double[], double[], double, int[], double, int[], boolean[], double[], double[], double[], double[]). Static method in class optimization.Uncmin_f77

The secfac_f77 method updates the Hessian by the BFGS factored technique.

secunf_f77(int, double[], double[], double[][], double[], double[], double[], double, int[], double, int[], boolean[], double[], double[], double[]). Static method in class optimization.Uncmin_f77

The secunf_f77 method updates the Hessian by the BFGS unfactored approach.

setdiff(double, double). Method in class SPV_graphics.SPVGrint
This method sets the width and height of the world coordinate system.
setMarkerSize(double). Method in class SPV_graphics.SPVGrint
setdiff must be called before setMarkerSize.
setmin(double, double). Method in class SPV_graphics.SPVGrint
This method sets the minimum x and y values for the world coordinate system.
sign_f77(double, double). Static method in class linear_algebra.Blas_f77

This method implements the FORTRAN sign (not sin) function.

sign_j(double, double). Static method in class linear_algebra.Blas_j

This method implements the FORTRAN sign (not sin) function.

sndofd_f77(int, double[], Uncmin_methods, double[], double[][], double[], double, double[], double[]). Static method in class optimization.Uncmin_f77

The sndofd_f77 method finds second order forward finite difference approximations to the Hessian.

solveLower(double[][], double[], double[], int). Method in class linear_algebra.Triangular

This method obtains the solution, y, of the equation Ly = b where L is a known full rank lower triangular n by n matrix, and b is a known vector of length n.

solvePosDef(double[][], double[], double[], int, boolean). Method in class linear_algebra.Cholesky

This method solves the equation


      Ax = b

where A is a known n by n symmetric positive definite matrix, and b is a known vector of length n.

On entrance:
If factored == false, the lower triangle of a[ ][ ] should contain the lower triangle of A.
If factored == true, the lower triangle of a[ ][ ] should contain a lower triangular matrix R such that RR´ = A.
solveUpper(double[][], double[], double[], int). Method in class linear_algebra.Triangular
This method obtains the solution, x, of the equation Ux = y where U is a known full rank upper triangular n by n matrix, and y is a known vector of length n.
sorted_resid. Variable in class regression.Regress
spvDrawLine(Graphics, double, double, double, double). Method in class SPV_graphics.SPVGrint
DrawLine that uses world coordinates rather than pixel coordinates.
SPVGraph(). Constructor for class SPV_graphics.SPVGraph
spvGraph(SPVGrint, SPVGraph). Method in class SPV_graphics.SPVGraph
SPVGrint(int, int). Constructor for class SPV_graphics.SPVGrint
ssqfcn_f77(int, int, double[], double[], int). Static method in class optimization.LmderTest_f77
ssqfcn_f77(int, int, double[], double[], int). Static method in class optimization.LmdifTest_f77
ssqjac_f77(int, int, double[], double[][], int). Static method in class optimization.LmderTest_f77
stretch(Point). Method in class rubberband.Rubberband
stretched. Variable in class rubberband.Rubberband
SVDC_f77(). Constructor for class linear_algebra.SVDC_f77
SVDC_j(). Constructor for class linear_algebra.SVDC_j
SVDCException(). Constructor for class linear_algebra.SVDCException
SVDCException(int). Constructor for class linear_algebra.SVDCException
SVDCException(String). Constructor for class linear_algebra.SVDCException
SVDCTest_f77(). Constructor for class linear_algebra.SVDCTest_f77
SVDCTest_j(). Constructor for class linear_algebra.SVDCTest_j
sw. Variable in class tests_of_fit.NPP
SW(double[], double[], int). Method in class tests_of_fit.NPP
This routine calculates the value of a version of the Shapiro-Wilk test of normality statistic.

T

TicDraw(). Constructor for class SPV_graphics.TicDraw
TicID(). Constructor for class SPV_graphics.TicID
title. Variable in class SPV_graphics.SPVGraph
tregup_f77(int, double[], double[], double[], double[][], Uncmin_methods, double[], double[], boolean[], double[], double[], double[], int[], double[], double[], double[], double[], boolean[], int, double[]). Static method in class optimization.Uncmin_f77

The tregup_f77 method decides whether to accept xpls = x + sc as the next iterate and update the trust region dlt.

Triangular(). Constructor for class linear_algebra.Triangular

U

Uncmin_f77(). Constructor for class optimization.Uncmin_f77

W

wh2ph(double). Method in class SPV_graphics.SPVGrint
world height to pixel height
ww2pw(double). Method in class SPV_graphics.SPVGrint
world width to pixel width

X

x. Variable in class regression.Regress
x. Variable in class SPV_graphics.SPVGraph
xhigh. Variable in class SPV_graphics.SPVGraph
xlow. Variable in class SPV_graphics.SPVGraph
xmax. Variable in class tests_of_fit.Histo
xmax. Variable in class SPV_graphics.SPVGraph
xmin. Variable in class tests_of_fit.Histo
xmin. Variable in class SPV_graphics.SPVGraph
xnormi(double). Static method in class distributions.CDF_Normal
This method calculates the normal cdf inverse function.
xp2xw(int). Method in class SPV_graphics.SPVGrint
x pixel coordinates to world coordinates
xpl. Variable in class tests_of_fit.Histo
xw2xp(double). Method in class SPV_graphics.SPVGrint
x world coordinates to pixel coordinates

Y

y. Variable in class SPV_graphics.SPVGraph
yhigh. Variable in class SPV_graphics.SPVGraph
ylow. Variable in class SPV_graphics.SPVGraph
ymax. Variable in class tests_of_fit.Histo
ymax. Variable in class SPV_graphics.SPVGraph
ymin. Variable in class tests_of_fit.Histo
ymin. Variable in class SPV_graphics.SPVGraph
yp2yw(int). Method in class SPV_graphics.SPVGrint
y pixel coordinates to world coordinates
ypl. Variable in class tests_of_fit.Histo
yw2yp(double). Method in class SPV_graphics.SPVGrint
y world coordinates to pixel coordinates